Deniz ŞANLI

Masters Student in Chemical&Biological Engineering

Has completed bachelor’s degree in İstanbul Technical University Chemical Engineering Department. Currently, Master student at

Koc University Chemical & Biological Engineering Department.

Reasearch areas: Drug design for JMJD2A-lysine specific histone demethylase enzyme via ilib Diverse,

LiganScout and Autodock, parametrization of novel residues for molecular dynamic simulations by using

Amber ff03 force field and QM/MM techniques, molecular dynamic simulations of histone H3 tails that contain

post translationally modified residues, modal analysis of MD trajectories to reveal the cooperativity between

different histone H3 modifications, statistical mechanical energy analysis of MD trajectories for clustering studies.

Computational Skills, Autodock, NAMD, AMBER, VMD, REDIII, iLib Diverse,

LigandScout, Accelrys DS Visualizer, Gaussian03, PyMOL, Python, MatLAB