Microarray Data Analysis Workshop  (21st November  2010)

 

Course to be held on 22th November 2010 - 1st December 2010

Length of day: 2 hours including 15 minute breaks

Audience:        Bioinformaticians and Computer Scientist

Number of people: 15-20

 

 

 

 Introduction to Microarray Experiments

 

Topic

Length

Speaker

 

 

 

Introduction to Microarrays one and two colour systems

(including video (10 mins)

 

45 mins

 

Microarray Experimental Design

 

1hr

Microarray Data Capture  - reporting and submitting your results (incl. MIAME compliance)

 

1hr

Interactive practical (including overview Array Express.

recaps on experimental design)

 

2 hrs

 

 

 Basic Microarray Data Analysis

Topic

Length

Speaker

Image Processing

 

45 mins

 

 

 

 

 

Normalisation/Quality Control (LOESS, global normalisation)

 

45 mins

Statistical Tests (multiple testing; gene lists)

 

 

Clustering/Visualisation

 

 

Practical R (Bio conductor)

6 hrs

 

Practical : 2-colour data

 

1-2 hrs

 

Practical: 1-colour data

 

1-2 hrs

 

 


 

Microarray Data Analysis Building a biological picture  

 

Topic

Length

Speaker

 

Building a biological picture annotation

GO etc.

 

Case studies/ Facility

1hr

 

 Introduction to Taverna workflow  and practical

6hr

 

 

 

 

Question and Answer session

 

30 mins

 

 

Required material: