Microarray Data Analysis Workshop (21st November 2010)
Course to be held on 22th November 2010 - 1st December 2010
Length of day: 2 hours including 15 minute breaks
Audience: Bioinformaticians and Computer Scientist
Number of people: 15-20
Introduction to Microarray Experiments
|
Topic |
Length |
Speaker |
|
|
|
|
|
Introduction to Microarrays one and two colour systems (including video (10 mins)
|
45 mins |
|
|
Microarray Experimental Design
|
1hr |
|
|
Microarray Data Capture - reporting and submitting your results (incl. MIAME compliance)
|
1hr |
|
|
Interactive practical (including overview Array Express. recaps on experimental design)
|
2 hrs |
|
Basic Microarray Data Analysis
|
Topic |
Length |
Speaker |
|
Image Processing
|
45 mins |
|
|
Normalisation/Quality Control (LOESS, global normalisation)
|
45 mins |
|
|
Statistical Tests (multiple testing; gene lists)
|
|
|
|
Clustering/Visualisation
|
|
|
|
Practical – R (Bio conductor) |
6 hrs |
|
|
Practical : 2-colour data
|
1-2 hrs |
|
|
Practical: 1-colour data
|
1-2 hrs |
|
Microarray Data Analysis – Building a biological picture
|
Topic |
Length |
Speaker |
|
Building a biological picture – annotation GO etc.
Case studies/ Facility |
1hr |
|
|
Introduction to Taverna workflow and practical |
6hr |
|
|
|
|
|
|
Question and Answer session
|
30 mins |
|
Required material: