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Journal Articles
- Gul, S., F. Rahim, S. Isin, F. Yilmaz, N. Ozturk, M. Turkay and I.H. Kavakli, Structure-based design and classifications of small molecules regulating the circadian rhythm period, Nature Scientific Reports, (in print) 2021 >
- Kavakli, I.H., S. Gul and M. Turkay, Identification of novel small molecules targeting core clock proteins to regulate circadian rhythm, Curr. Op. in Chem. Eng., (in print) 2021 >
- Pappas, I., S. Avraamidou, J. Katz, B. Burnak, B. Beykal, M. Turkay and E.N. Pistikopoulos, Multiobjective Optimization of Mixed-Integer Linear Programming Problems: A Multiparametric Optimization Approach, Ind.Eng. Chem. &Res, 2021 (60), 8493-8503 (2021) >
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Aseel, S, H. Al-Yafei, M. Kucukvar, N.C. Onat, M. Turkay, Y. Kozanoglu,.A. Al-Sulaiti, A. Al-Hajri, A Model of Estimating the Carbon Footprint of Maritime Transportation of Liquefied Natural Gas under Uncertainty, Sustainable Production and Consumption, 27, 1602-1613 (2021) >
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Rasmi, S.A.B., A. Fattahi and M. Turkay, SASS: slicing with adaptive steps search method for finding the non-dominated points of tri-objective mixed-integer linear programming problems, Annals of OR, 296, 841-876 (2021) >
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De A., A. Choudhary, M. Turkay and M.K. Tiwari, Bunkering Policies for a Fuel Bunker Management Problem for Liner Shipping Networks, Eur. J. Opers. Res. 289(3), 927-939 (2021) >
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Doruk, Y.U., D. Yarparvar, Y.K. Akyel, S. Gul, A.C. Taskin, F. Yilmaz, I. Baris, N. Ozturk, M. Turkay, N. Ozturk, A. Okyar and I.H Kavakli, A CLOCK-binding small molecule disrupts the interaction between CLOCK and BMAL1 and enhances circadian rhythm amplitude, Journal of Biological Chemistry, 295(11), 3518-3531 (2020) >
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Kropat E., M. Turkay, G.W. Weber, Introduction to the Special Issue on Fuzzy Analytics and Stochastic Models in Neuroscience, IEEE Trans. on Fuzzy Systems, 28(1), 1-4 (2020) >
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Serfidan, A.C., F. Uzman and M. Turkay, Optimal Estimation of Physical Properties of the Products of an Atmospheric Distillation Column using Support Vector Regression, Comp&Chem. Eng., 134, 106711 (2020) >
- Resat H.G. and M. Turkay, A bi-objective Model for Design and Analysis of Sustainable Intermodal Transportation Systems: a Case Study of Turkey, Int. J. Prod. Res., 57(19), 6146-6161 (2019) >
- Rasmi, S.A.B., C. Kazan and M. Turkay, A Multi-Criteria Decision Analysis to Include Environmental, Social, and Cultural Issues in the Sustainable Aggregate Production Plans, Comp.&I.E., 132, 348-360 (2019) >
- Resat H.G. and M. Turkay, A Discrete-Continuous Optimization Approach for the Design and Operation of Synchromodal Transportation Networks, Comp. & I.E., 130, 512-525 (2019) >
- Rasmi, S.A.B. and M. Turkay, GoNDEF: An Exact Method to Generate All Non-Dominated Points of Multi-Objective Mixed-Integer Linear Programs, Opt. & Eng. 20(1), 89-117 (2019) >
- Fattahi, A. and M. Turkay, A One Direction Search Method to Find the Exact Nondominated Frontier of Biobjective Mixed-Binary Linear Programming Problems, Eur. J. Opers. Res. 266(2), 415-425 (2018) >
- Anvari, S. and M. Turkay, The Facility Location Problem from the Perspective of Triple Bottom Line Accounting of Sustainability, Int. J. Prod. Res., 55(21) 6266-6287 (2017) >
- Kabatepe, B. and M. Turkay, A Bi-Criteria Optimization Model to Analyze the Impact of Electric Vehicles on Costs and Emissions, Comp. Chem. Eng. 102, 156-168 (2017) >
- Turkay, M., O. Saracoglu and M.C. Arslan, Sustainability in Supply Chain Management: Aggregate Planning from Sustainability Perspective, PLoS ONE, 11(1): e0147502 (2016) >
- Ozturk, A and M. Turkay, Bicriteria Optimization Approach to Analyze Incorporation of Biofuel and Carbon Capture Technologies, AIChE J.,62(9), 3473-3483 (2016) > Suppl 1 Suppl 2
- Anvari, S., S. Tuna, M. Canci and M. Turkay, Automated Box-Jenkins forecasting tool with an application for passenger demand in urban rail systems, J. Adv. Transportation, 50 (1), 25-49 (2016) >
- Tardu, M., F. Rahim, I.H. Kavakli and M. Turkay, MILP-Hyperbox Classification for Structure-Based Design Design in the Discovery of Small Molecule Inhibitors of Sirtuin6, RAIRO-OR, 50(2), 387-400 (2016) >
- Turkay, M., G. Felici, M. Szachniuk and P. Lukasiak, Recent Advances in Operations Research in Computational Biology, Bioinformatics and Medicine, RAIRO-OR, 50(2), 327-330 (2016) (editorial for Special Issue) >
- Dreval, A.V., T.P. Shestakova, M. Turkay, O.A. Dreval, D.A. Kulikov, O.S. Medvedev, Comparison of the results of blood glucose self-monitoring and continuous glucose monitoring in pregnant women with previous diabetes mellitus, Almanac of Clinical Medicine, 43 (2015), 66-71 >
- Resat, H.G. and M. Turkay, Design and operation of intermodal transportation network in the Marmara region of Turkey, Transp.Res. Part E, 83, 16-33 (2015) >
- Shahraki N., H. Cai, M. Turkay and M. Xu, Optimal Locations of Electric Public Charging Stations Using Real World Vehicle Travel Patterns, Transp.Res. Part D, 41, 165-176 (2015) >
- Fattahi, A. and M. Turkay, On the MILP Model for the U-shaped Assembly Line Balancing Problems, Eur. J. Opers. Res. 242(1), 343-346 (2015) >
- Saracoglu, O., M.C. Arslan and M. Turkay, Aggregate Planning Problem from Sustainability Perspective, ICALT 2015, 181-186 (2015) >
- Turkay, M. Turkey's Chemical Industry Expands into Global Markets, Chem. Eng. Progr., 111(5), 50-54 (2015) >
- Fattahi, A. and M. Turkay, e-OA for the Solution of Bi-Objective Generalized Disjunctive Programming Problems in the Synthesis of Nonlinear Process Networks, Computers and Chem. Eng., 72, 199-209 (2015) >
- Vaskan, P, G. Guillen-Gosalbez, M. Turkay and L. Jimenez-Esteller, Multi-objective optimization of utility plants under several environmental indicators using an MILP-based dimensionality reduction approach, Ind. Eng. Chem. Res., 53(50), 19559-19572 (2014) >
- Weber, G.W., J. Blazewicz, M. Rauner and M. Turkay, Recent advances in computational biology, bioinformatics, medicine and healthcare by modern OR, C. Eur. J. Ops. Res., 22(3), 427-430 (2014) (editorial for Special Issue) >
- Shahraki, N. and M.Turkay, Analysis of Interaction Among Land-Use, Transportation Network and Air Pollution using Stochastic Nonlinear Programming, Int.J. Env. Sci and Tech., 11(8), 2201-2216 (2014) >
- Fattahi, A., S. Elaoud, E.S. Azer and M. Turkay, A Novel integer programming formulation with logic cuts for the U-shaped assembly line balancing problem, Int. J. Prod. Res., 52(5) 1318-1333 (2014) >
- Kaya, O., F. Bagci and M. Turkay, Planning of capacity, production and inventory decisions in a generic reverse supply chain under uncertain demands and returns, Int. J. Prod. Res., 52(1) 270-282 (2014) >
- Arslan, M.C. and M. Turkay, EOQ Revisited with Sustainability Considerations, Foundations of Computing and Decision Sciences, 38(4), 223-249 (2013) >
- Donmez, I. and M. Turkay, Design of reverse logistics network for waste batteries with an application in Turkey, Chem. Eng. Trans., 35, 1293-1298 (2013) >
- Masmoudi, Y., M. Turkay and H. Chabchoub, A Binarization Strategy for Modelling Mixed Data in Multigroup Classification, IEEE Advanced Logistics and Transport, 347-353 (2013) >
- Cakir, B., O. Dagliyan, E. Dagyildiz, I. Baris, I.H. Kavakli, S. Kizilel and M. Turkay, Structure Based Discovery of Small Molecules to Regulate the Activity of Human Insulin Degrading Enzyme, PLoS ONE, 7(2), e31787 (2012) >
- Dagliyan, O., F. Uney-Yuksektepe, I.H. Kavakli and M. Turkay, Optimization Based Tumor Classification from Microarray Gene Expression Data, PLoS ONE, 6(2), e14579 (2011) > Suppl
- Kaplan, U, M. Turkay. B. Karasozen and Biegler, L.T., Optimization of Supply Chain Systems with Price Elasticity of Demand, Informs Journal on Computing, 23(4) 557-568 (2011) >
- Atalay, S., M. Canci, G. Kaya, C. Oguz and Turkay, M., Intermodal Transportation in Istanbul via Marmaray Project, IBM J. Res. & Dev., 54(6) 9:1-9:10 (2010) >
- Bertolazzi, P., J. Blazewicz, and M. Turkay, Operations Research Models for Computational Biology, Bioinformatics and Medicine, J. Math. Mod. & Alg., 9(3), 209-211 (2010) (editorial for Special Issue) >
- Turkay, M., Karasozen, B., Biegler, L.T., McAvoy, T.J., Hybrid systems: Modeling, simulation and optimization, Journal of Process Control, 19(8), 1217-1217 (2009) (editorial for Special Issue) >
- Dagliyan, O., Kavakli, I.H., Turkay, M., Classification of Cytochrome P450 Inhibitors with Respect to Binding Free Energy and pIC(50) Using Common Molecular Descriptors, J. of Chem. Inf & Mod., 49(10), 2403-2411 (2009) >
- Armutlu,P., M.E. Ozdemir, S. Ozdas, I.H. Kavakli and M. Turkay, "Discovery of Novel CYP17 Inhibitors for the Treatment of Prostate Cancer with Structure-Based Drug Design", Letters in Drug Design and Discovery, 6(5), 337-344 (2009) >
- Kaplan, U., M. Turkay, L.T. Biegler and B. Karasozen, "Modeling and Simulation of Metabolic Networks for Estimation of Biomass Accumulation Parameters", Discrete Applied Mathematics, 157(10), 2483-2493 (2009) >
- Yucel, E., F. Karaesmen, F. S. Salman and M. Turkay, Optimizing Product Assortment Under Customer-driven Demand Substitution, European Journal of Operational Research, 199(2009), 759-768 (2009) >
- Armutlu, P., M.E. Ozdemir, F. Uney-Yuksektepe, I.H. Kavakli and M. Turkay, Classification of drug molecules considering their IC50 values using mixed-integer linear programming based hyper-boxes method, BMC Bioinformatics, 9, 411 (2008) >
- Ucyigitler, S., M.C. Camurdan, M. Turkay and J.R. Elliott, Inferring transferable intermolecular potential models, Molecular Simulation, 34(2), 147-154 (2008) >
- Uney Yuksektepe, F., O. Yilmaz and M. Turkay, "Prediction of Secondary Structures of Proteins using a Two-Stage Method", Comput. Chem. Eng., 32(1-2), 78-88 (2008) > Suppl
- Yogurtcu, O.M., S.B. Erdemli, R. Nussinov, M. Turkay, and O. Keskin, "Restricted Mobility of Conserved Residues in Protein-Protein Interfaces in Molecular Simulations", Biophysical Journal, 94(9), 3475-3485 (2008) > Suppl
- Kahraman, P. and M. Turkay, "Classification of 1,4-Dihydropyridine Calcium Channel Antagonists using Hyper-Box Approach", Ind. Eng. Chem. Res., 46(14), 4921-4929 (2007) >
- Mestan, E., M. Turkay and Y. Arkun, "Optimization of Operations in Supply Chain Systems Using Hybrid Systems Approach and Model Predictive Control", Ind. Eng. Chem. Res., 45(19), 6493 - 6503 (2006) >
- Uney, F. and M. Turkay, "A Mixed-Integer Programming Approach to Multi-Class Data Classification Problem", European Journal of Operational Research, 173(3), 910-920 (2006) >
- Saglam, B., F.S. Salman, S. Sayin, and M. Turkay, "A Mixed-Integer Programming Approach to the Clustering Problem with An Application in Customer Segmentation", European Journal of Operational Research, 173(3), 866-879 (2006) >
- Soylu, A., C. Oruc, M. Turkay, K. Fujita, and T. Asakura, "Synergy Analysis of Collaborative Supply Chain Management in Energy Systems using Multi-Period MILP", European Journal of Operational Research, 174(1), 387-403 (2006) > Suppl
- Gursoy, A., O. Keskin, M. Turkay, and B. Erman, "Relationships between Unfolded Configurations of Proteins and Dynamics of Folding to the Native State", J. Polymer Sci. Part B: Polymer Phys, 44, 3667-3678 (2006) >
- Turkay, M., C. Oruç, K. Fujita, and T. Asakura, "Multi-Company Collaborative Supply Chain Management with Economical and Environmental Considerations", Comput. Chem. Eng., 28(6-7), 985-992 (2004) >
- Keskin, O., D. Yuret, A. Gursoy, M. Turkay, and B. Erman, "Relationships Between Amino Acid Sequence and Backbone Torsion Angle Preferences and Correlations in Proteins", Proteins: Structure, Function, and Bioinformatics, 55(4), 992-998 (2004) >
- Turkay, M., and I.E. Grossmann, "Tight Mixed-Integer Optimization Models for the Solution of Linear and Nonlinear Systems of Disjunctive Equations", Comput. Chem. Engng., 22(9), 1229-1239 (1998) >
- Turkay, M., and I.E. Grossmann, "Structural Flowsheet Optimization with Complex Investment Cost Functions", Comput. Chem. Engng., 22(4-5), 673-686 (1998) >
- Turkay, M., and I.E. Grossmann, "Disjunctive Programming Techniques for the Optimization of Process Systems with Discontinuous Investment Costs-Multiple Size Regions", Ind. Eng. Chem. Res., 35(8), 2611-2623 (1996) >
- Grossmann, I.E. and M. Turkay, "Solution of Algebraic Systems of Disjunctive Equations", Comput. Chem. Engng., 20(S1), S339-S344 (1996) >
- Turkay, M., and I.E. Grossmann, "Logic-Based MINLP Algorithms for the Optimal Synthesis of Process Networks", Comput. Chem. Engng., 20(8), 959-978 (1996). (1997 AIChE/CAST Division Ted Peterson Award) >
- Turkay, M., T. Gurkan and C. Ozgen, "Synthesis of Regulatory Control Structures for a Styrene Plant", Comput. Chem. Engng., 17(5-6), 601-608 (1993) >
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Supplementary Materials for publications
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Books and Book Chapters
Rasmi S.A.B. and M. Turkay, Aggregate Planning: Strategies, Models, Analysis, Springer, Heidelberg, Germany, 2021
Shahraki N. and M. Turkay, Urban Logistics: Multi-modal Transportation Network Design Accounting for Stochastic Passenger Demand and Freight Logistics, pp.131-148, M. Lu and J. De Bock (Eds.) Sustainable Logistics and Supply Chains, Springer, Heidelberg, Germany (2015). >
Resat G. and M. Turkay, Transport and Logistics Models for Sustainability, Sustainability of Products, Processes and Supply Chains: Theory and Applications, Fengqi You (Ed.), Elsevier, Amsterdam, The Netherlands (2015). >
Yılmaz Ozbagci, S., B. San Akca and M. Turkay, Energy Efficiency Map of Turkey (2013) (in Turkish) >
Turkay, M. and M. Canci, "Planning Automotive Logistics in Marmara Region", OSD Publications, Istanbul, Turkey (2008) (in Turkish) >
Turkay, M. and F.Uney-Yuksektepe, "Multi-class data classification via mixed-integer optimization", Encyclopedia of Optimization, 2nd ed., C.A. Floudas and P.M. Pardalos (Eds.), 2348-2354, Springer, Dordrecht, The Nederlands (2008).
Turkay, M. and U. Kaplan, "Integrated Planning and Scheduling", Encyclopedia of Optimization, 2nd ed., C.A. Floudas and P.M. Pardalos (Eds.), 2348-2354, Springer, Dordrecht, The Nederlands (2008).
F.Uney-Yuksektepe and M. Turkay, "Multi-Group Data Classification via Mixed-Integer Linear Programming Based Hyper-Box Enclosure Approach", Encyclopedia of Data Warehousing and Mining, 2nd ed., J. Wang (ed.), Information Science Reference, Hershey, PA (2008),
Turkay, M. "Environmentally Conscious Supply Chain Management", Process Systems Engineering, vol 3: Supply Chain Optimization, L. Papageorgiou and M. Georgiadis (Eds.), Chapter 3, 45-86, WILEY-VCH, Weinheim (2008).
Eraslan, I.H., M. Bulu. and M. Turkay, "Clustering Analysis of Networked Organizations", Encyclopedia of Networked and Virtual Organizations, G.D. Putnik and M.M. Cunha (Eds.), vol. I, 199-208, Information Science Reference, Hershey, PA (2008).
Kahraman, P. and M. Turkay, "QSAR Analysis of 1,4-Dihydropyridine Calcium Channel Antagonists", Computer-Aided Chem. Eng., vol 24: ESCAPE-17, V. Plesu and P.S. Agachi (Eds.), 977-982, Elsevier, Amsterdam (2007).
Turkay, M. and U. Kaplan, "Optimization Methods and Its Applications in Organic Agriculture", Strategies and Applications in Realizing Sustainable Competitive Advantage in Organic Agriculture, I.H. Eraslan and F. Selli (Eds.), 373-394, International Competitiveness Research Institute Publications, Istanbul (2006). (in Turkish)
Turkay,M. "Optimization Models and Solution Algorithms", New Frontiers in Total Quality and Strategic Management, S. Kingir (Ed.), 309-328, Gazi Publishing, Ankara (2006). (in Turkish)
Uney-Yuksektepe, F. and M. Turkay, "Data Mining", New Frontiers in Total Quality and Strategic Management, S. Kingir (Ed.), 141-152, Gazi Publishing, Ankara (2006). (in Turkish)
Turkay, M. and A. Soylu, "Synergy Analysis of Collaboration with Biofuel Use for Environmentally Conscious Energy Systems", Computer-Aided Chem. Eng., vol 21B: ESCAPE-16, W. Marquardt and C. Pantelides (Eds.), 1827-1832, Elsevier, Amsterdam (2006)
Turkay, M., O. Yilmaz and F. Uney-Yuksektepe, "Prediction of Secondary Structures of Proteins Using a Two-Stage Method", Computer-Aided Chem. Eng., vol 21B: ESCAPE-16, W. Marquardt and C. Pantelides (Eds.), 1679-1685, Elsevier, Amsterdam (2006).
Turkay, M., F. Uney and O. Yilmaz, "Prediction of Folding Type of Proteins Using Mixed-Integer Linear Programming", Computer-Aided Chem. Eng., vol 20A: ESCAPE-15, L. Puigjaner and A. Espuna (Eds.), 523-528, Elsevier, Amsterdam (2005).
Turkay M., T. Asakura, K. Fujita, C.W. Hui, Y. Natori, Y. Masaiwa, H. Oonishi, and I.B. Tjoa, "Total Site Optimization of a Petrochemical Complex", AIChE Symposium Series, vol. 94, G. Blau and J. Pekny (Eds.), 185-189 (1998).
Turkay, M., and I.E. Grossmann, "Logic-Based Outer-Approximation and Benders Decomposition Algorithms for the Synthesis of Process Networks", State of the Art in Global Optimization: Computational Methods and Applications, C.A. Floudas and P.M. Pardalos (Eds.), 585-607 (1996).
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Patents
Asakura, T., M. Turkay () , Y. Masaiwa, H. Onishi, and S. Takeshita, "Optimization System for Production Planning", Japan Patent 2001-255925 >
Takeshita S., H. Onishi, Y. Masaiwa, M. Turkay (), and T. Asakura, "Optimization System for Plant Repair Plan", Japan Patent 2001-256421 >
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Peer Reviewed Conference Proceedings
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Serfidan, A.C. and M. Turkay, Explanatory and Predictive Analysis of Naphtha Splitter Products, Comp Aid Chem Eng, 50, 1-6, 2021 >
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Serfidan, A.C. and M. Turkay, Octane Optimization with a Combined Machine Learning and Optimization Approach, Comp Aid Chem Eng, 50, 221-226, 2021 >
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Serfidan, A.C., G. Ozkan and M. Turkay, Automated Box-Jenkins Methodology to Forecast the Prices of Crude Oil and its Derivatives, Comp Aid Chem Eng, 50, 631-636, 2021 >
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Ulusoy, B. and M. Turkay, Route Balancing Vehicle Routing Problems with Time Windows for Urban Logistics, 2019 International Symposium on Advanced Electrical and Communication Technologies (ISAECT), 2019 >
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Bozgeyik E.N. and M. Turkay,A Multi-Objective Optimization Approach for Sustainable Supply Chains Incorporating Business Strategy, 2019 International Symposium on Advanced Electrical and Communication Technologies (ISAECT), 2019 >
Mete, E. and M. Turkay, Energy Network Optimization in an Oil Refinery, Proc. PSE 2018 >
Armutlu P, M.E. Ozdemir, M. Turkay, I.H. Kavakli, "Prostat Kanserine Karsi Ilac Gelistirme", Proceedings of 13. Ulusal Biyomedikal Mühendisligi Toplantisi. BIYOMUT 08, METU, Ankara, May 2008. (in Turkish).
- Ozdemir, M.E., H. Kavakli and M. Turkay, "Structure-based design and analysis of cytochrome P450 inhibitors for the treatment of prostate cancer", Proc. BIOCOMP'06, Eds.: H.R. Arabnia and H. Valafar, 378-384 (2006).
- Yucel, E., F. Karaesmen, S. Salman and M.Turkay, "Product Assortment under Customer-Driven Demand Substitution in Retail Operations", Proc. IC-ILS, (2006).
Soylu, A. and M. Turkay, "Synergy Analysis of Collaborating Energy Production Systems", Proc. IC-ILS, (2006).
Soylu, A. and M. Turkay, Linear Programming Approach to Develop Optimal Plans for Transition to Renewable Energy Sources, Yeksem-III. Renewable Energy Sources Symposium, 1-5 (2005). (in Turkish)
Turkay, M., "Structural Synthesis of Small Molecule Drug Candidates", Proc. FOCAPD 2004, 395-398 (2004).
Bakan, A., O.N. Yogurtcu, M. Turkay, A. Gursoy, B. Erman, "Drug Design using Internet Resources", EuroQSAR 2004 Proceedings: QSAR Modeling in Rational Design of Bioactive Molecules, Eds.: E. Aki (Sener) and I. Yalcin, 526-527 (2004).
Turkay, M., "Multi-Company Collaborative Supply Chain Management for the Improvement of Financial and Environmental Performance", Proc. EMCC-3 (2003).
Turkay, M., K. Fujita. and T. Asakura, "Supply Chain Integration at Industrial Zones: Energy Integration", Proc. FOCAPO 2003, 217-220 (2003).
Takeshita T., T. Asakura, M. Turkay and K. Fujita,
The Operations Research Society of Japan, Vol.2000(20000927) pp. 216-217 (2000). >
Turkay, M., C. Ozgen and T. Gurkan, "Performance Evaluation of Control System Structure for a Monomer Plant", Proc. SICICI'92, Singapore (1992).
Metin Turkay
Professor
Department of Industrial Engineering
Koc University
Rumelifeneri Yolu, 34450 Sariyer, Istanbul, Turkey
Tel: +90 (212) 338-1586
Fax: +90 (212) 338-1548
E-Mail: mturkay@ku.edu.tr